Mgr. Lukáš V. F. Novák – Curriculum Vitae

PhD student, Researcher
Evolutionary Protistology Group
Department of Parasitology
Charles University, Prague

Education & Related Experience:

  • 2013 – Present: PhD study of Parasitology, Faculty of Science, Charles University in Prague. Thesis: Cell biology and genomics of Trimastix pyriformis.
    • Since 2018: Supervision of a BSc student on the cell biology of Paratrimastix pyriformis.
    • 2017 – 2018: Teaching – Molecular phylogenetics and systematics, practical course.
    • 2017: Invited seminar talk “Genomics and cell biology of Paratrimastix pyriformis“, University of Warsaw.
    • 2017: Co-supervision of a visiting MSc student on the cell biology of Preaxostyla.
    • 2017: Workshop on Genomics, Český Krumlov.
    • 2016: Opponent for a BSc thesis “Biogenesis and function of peroxisomes, particularly in parasitic protists”.
    • 2014: Research stay at the Dalhousie University in Halifax, NS, Canada.
  • 2011 – 2013: MSc study of Parasitology, Faculty of Science, Charles University in Prague. Thesis: Mitochondrion of Trimastix pyriformis (link).
    • 2013: Course of Methods of Functional Genomics, České Budějovice.
  • 2008 – 2011: BSc study of Biology, Faculty of Science, Charles University in Prague. Thesis: Lateral gene transfer and its utilization in the phylogeny of eukaryotes (link).

Funding & Awards:

  • 2017: Bedřich Hrozný Award for creative work (A Eukaryote without a Mitochondrial Organelle), Charles University.
  • 2016: Josef Lux Award for ethically significant media act (Scientists against fear and indifference), The Josef Lux Foundation.
  • 2014, 2015: Holz-Conner Travel Award, International Society of Protistologists.
  • 2013 – 2017: STARS – Supporting Talented PhD Research Students, Charles University.

Membership:

  • Since 2018: International Society for Evolutionary Protistology.
    • 2018 – Present: Newsletter editor.
  • Since 2014: International Society of Protistologists.
    • 2016 – Present: Community manager.
    • 2016 – 2017: Nominating committee.
  • Since 2011: Czech Parasitological Society.

Conferences:

    • 5th joint meeting of the Phycological Society of America & International Society of Protistologists, Vancouver, BC, Canada, 29/7–2/8/2018.
      Talk: How to lose a mitochondrion: Comparative genomics of Preaxostyla.
    • Weekend with Science 2018, Břežany, Czech Republic, 14–17/6/2018.
      Talk: Path towards amitochondriality: Introduction to our projects on Preaxostyla.
    • XXII meeting of the International Society for Evolutionary Protistology, Droushia, Cyprus, 18–27/5/2018.
      Talk: A comparative genomic study on metabolism and cell biology of Preaxostyla flagellates.
    • 48th Jírovec’s Protozoological Days, Kunčice pod Ondřejníkem, Czech Republic, 30/4–4/5/2018.
      Talk: Metabolism and Cell Biology of Preaxostyla Flagellates: A Comparative Genomic Study.
    • 15th International Congress of Protistology, Prague, 30/7–4/8/2017.
      Talk: Genomics and cell biology of the free living preaxostylan flagellate Paratrimastix pyriformis.
      Co-organizer of social events.
    • 46th Jírovec’s Protozoological Days, Bítov, Czech Republic, 2–6/5/2016.
      Talk: Preaxostyla: the evolution of anaerobic protists.
    • VII European Congress of Protistology (ECOP-ISOP), Seville, Spain, 5-10/9 2015
      Talk: Evolutionary History of the Arginine Deiminase Pathway among Eukaryotes.
    • 45th Jírovec’s Protozoological Days, Dubovice, Czech Republic, 11–15/05, 2015.
      Talk: Evolutionary History of the Arginine Deiminase Pathway among Eukaryotes
    • Protist 2014, Banff, Alberta, Canada, 3–8/08, 2014
      Talk: Mitochondrial organelle of Trimastix pyriformis.
    • 44th Jírovec’s Protozoological Days, Krásná, Czech Republic, 12–16/05, 2014.
      Talk: Hydrogenosome-Like Organelle of Trimastix pyriformis.
    • 43rd Jírovec’s Protozoological Days, Nový Dvůr, Czech Republic, 6–10/05, 2013.
      Talk: Mitochondrion-like Organelle of Trimastix pyriformis.
    • 42nd Jírovec’s Protozoological Days, Kletečná, Czech Republic, 7-11/05, 2012.
      Talk: SUF system for synthesis of Fe-S clusters in Monocercomonoides and Trimastix.
    • VI European Congress of Protistology (ECOP), Berlin, Germany, 25-29/7, 2011.
    • 41st Jírovec’s Protozoological Days, Benecko v Krkonoších, Czech Republic, 2011.

    Publications:

    • Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AGB, Keeling PJ, Roger AJ, Čepička I, Hampl V: Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. BMC Evol Biol 2016, 16:197.
    • Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V: A Eukaryote without a Mitochondrial Organelle. Curr Biol 2016, 26:1274–1284.
    • Zubáčová Z, Novák L, Bublíková J, Vacek V, Fousek J, Rídl J, Tachezy J, Doležal P, Vlček Č, Hampl V: The Mitochondrion-Like Organelle of Trimastix pyriformis Contains the Complete Glycine Cleavage System. PLoS One 2013, 8:e55417.

    Other Experience:

    • 2015 – 2018: Initiated and co-organized a civic campaign “Scientists against fear and indifference” aimed at countering xenophobia and supporting evidence-based policy in immigration and integration of foreigners in the Czech Republic. Read more here.
    • Since 2011: Published popular science articles covering parasitology, protistology, and microbiology. Mostly in Czech. Full list here.
    • 2007 – 2017: Observatory guide at Prague’s Štefánik Observatory. Amateur and semi-professional astronomical work, public science outreach activities in astronomy and related fields. Observatory page.
      • 2017: lecture “The first three billions: chapters from the evolution of microorganisms”.